from datetime import datetime from importlib import import_module import os from toxicity_ml_pipeline.data.data_preprocessing import ( DefaultENNoPreprocessor, DefaultENPreprocessor, ) from toxicity_ml_pipeline.data.dataframe_loader import ENLoader, ENLoaderWithSampling from toxicity_ml_pipeline.data.mb_generator import BalancedMiniBatchLoader from toxicity_ml_pipeline.load_model import load, get_last_layer from toxicity_ml_pipeline.optim.callbacks import ( AdditionalResultLogger, ControlledStoppingCheckpointCallback, GradientLoggingTensorBoard, SyncingTensorBoard, ) from toxicity_ml_pipeline.optim.schedulers import WarmUp from toxicity_ml_pipeline.settings.default_settings_abs import GCS_ADDRESS as ABS_GCS from toxicity_ml_pipeline.settings.default_settings_tox import ( GCS_ADDRESS as TOX_GCS, MODEL_DIR, RANDOM_SEED, REMOTE_LOGDIR, WARM_UP_PERC, ) from toxicity_ml_pipeline.utils.helpers import check_gpu, set_seeds, upload_model import numpy as np import tensorflow as tf try: from tensorflow_addons.optimizers import AdamW except ModuleNotFoundError: print("No TFA") class Trainer(object): OPTIMIZERS = ["Adam", "AdamW"] def __init__( self, optimizer_name, weight_decay, learning_rate, mb_size, train_epochs, content_loss_weight=1, language="en", scope='TOX', project=..., experiment_id="default", gradient_clipping=None, fold="time", seed=RANDOM_SEED, log_gradients=False, kw="", stopping_epoch=None, test=False, ): self.seed = seed self.weight_decay = weight_decay self.learning_rate = learning_rate self.mb_size = mb_size self.train_epochs = train_epochs self.gradient_clipping = gradient_clipping if optimizer_name not in self.OPTIMIZERS: raise ValueError( f"Optimizer {optimizer_name} not implemented. Accepted values {self.OPTIMIZERS}." ) self.optimizer_name = optimizer_name self.log_gradients = log_gradients self.test = test self.fold = fold self.stopping_epoch = stopping_epoch self.language = language if scope == 'TOX': GCS_ADDRESS = TOX_GCS.format(project=project) elif scope == 'ABS': GCS_ADDRESS = ABS_GCS else: raise ValueError GCS_ADDRESS = GCS_ADDRESS.format(project=project) try: self.setting_file = import_module(f"toxicity_ml_pipeline.settings.{scope.lower()}{project}_settings") except ModuleNotFoundError: raise ValueError(f"You need to define a setting file for your project {project}.") experiment_settings = self.setting_file.experiment_settings self.project = project self.remote_logdir = REMOTE_LOGDIR.format(GCS_ADDRESS=GCS_ADDRESS, project=project) self.model_dir = MODEL_DIR.format(GCS_ADDRESS=GCS_ADDRESS, project=project) if experiment_id not in experiment_settings: raise ValueError("This is not an experiment id as defined in the settings file.") for var, default_value in experiment_settings["default"].items(): override_val = experiment_settings[experiment_id].get(var, default_value) print("Setting ", var, override_val) self.__setattr__(var, override_val) self.content_loss_weight = content_loss_weight if self.dual_head else None self.mb_loader = BalancedMiniBatchLoader( fold=self.fold, seed=self.seed, perc_training_tox=self.perc_training_tox, mb_size=self.mb_size, n_outer_splits="time", scope=scope, project=project, dual_head=self.dual_head, sample_weights=self.sample_weights, huggingface=("bertweet" in self.model_type), ) self._init_dirnames(kw=kw, experiment_id=experiment_id) print("------- Checking there is a GPU") check_gpu() def _init_dirnames(self, kw, experiment_id): kw = "test" if self.test else kw hyper_param_kw = "" if self.optimizer_name == "AdamW": hyper_param_kw += f"{self.weight_decay}_" if self.gradient_clipping: hyper_param_kw += f"{self.gradient_clipping}_" if self.content_loss_weight: hyper_param_kw += f"{self.content_loss_weight}_" experiment_name = ( f"{self.language}{str(datetime.now()).replace(' ', '')[:-7]}{kw}_{experiment_id}{self.fold}_" f"{self.optimizer_name}_" f"{self.learning_rate}_" f"{hyper_param_kw}" f"{self.mb_size}_" f"{self.perc_training_tox}_" f"{self.train_epochs}_seed{self.seed}" ) print("------- Experiment name: ", experiment_name) self.logdir = ( f"..." if self.test else f"..." ) self.checkpoint_path = f"{self.model_dir}/{experiment_name}" @staticmethod def _additional_writers(logdir, metric_name): return tf.summary.create_file_writer(os.path.join(logdir, metric_name)) def get_callbacks(self, fold, val_data, test_data): fold_logdir = self.logdir + f"_fold{fold}" fold_checkpoint_path = self.checkpoint_path + f"_fold{fold}/{{epoch:02d}}" tb_args = { "log_dir": fold_logdir, "histogram_freq": 0, "update_freq": 500, "embeddings_freq": 0, "remote_logdir": f"{self.remote_logdir}_{self.language}" if not self.test else f"{self.remote_logdir}_test", } tensorboard_callback = ( GradientLoggingTensorBoard(loader=self.mb_loader, val_data=val_data, freq=10, **tb_args) if self.log_gradients else SyncingTensorBoard(**tb_args) ) callbacks = [tensorboard_callback] if "bertweet" in self.model_type: from_logits = True dataset_transform_func = self.mb_loader.make_huggingface_tensorflow_ds else: from_logits = False dataset_transform_func = None fixed_recall = 0.85 if not self.dual_head else 0.5 val_callback = AdditionalResultLogger( data=val_data, set_="validation", from_logits=from_logits, dataset_transform_func=dataset_transform_func, dual_head=self.dual_head, fixed_recall=fixed_recall ) if val_callback is not None: callbacks.append(val_callback) test_callback = AdditionalResultLogger( data=test_data, set_="test", from_logits=from_logits, dataset_transform_func=dataset_transform_func, dual_head=self.dual_head, fixed_recall=fixed_recall ) callbacks.append(test_callback) checkpoint_args = { "filepath": fold_checkpoint_path, "verbose": 0, "monitor": "val_pr_auc", "save_weights_only": True, "mode": "max", "save_freq": "epoch", } if self.stopping_epoch: checkpoint_callback = ControlledStoppingCheckpointCallback( **checkpoint_args, stopping_epoch=self.stopping_epoch, save_best_only=False, ) callbacks.append(checkpoint_callback) return callbacks def get_lr_schedule(self, steps_per_epoch): total_num_steps = steps_per_epoch * self.train_epochs warm_up_perc = WARM_UP_PERC if self.learning_rate >= 1e-3 else 0 warm_up_steps = int(total_num_steps * warm_up_perc) if self.linear_lr_decay: learning_rate_fn = tf.keras.optimizers.schedules.PolynomialDecay( self.learning_rate, total_num_steps - warm_up_steps, end_learning_rate=0.0, power=1.0, cycle=False, ) else: print('Constant learning rate') learning_rate_fn = self.learning_rate if warm_up_perc > 0: print(f".... using warm-up for {warm_up_steps} steps") warm_up_schedule = WarmUp( initial_learning_rate=self.learning_rate, decay_schedule_fn=learning_rate_fn, warmup_steps=warm_up_steps, ) return warm_up_schedule return learning_rate_fn def get_optimizer(self, schedule): optim_args = { "learning_rate": schedule, "beta_1": 0.9, "beta_2": 0.999, "epsilon": 1e-6, "amsgrad": False, } if self.gradient_clipping: optim_args["global_clipnorm"] = self.gradient_clipping print(f".... {self.optimizer_name} w global clipnorm {self.gradient_clipping}") if self.optimizer_name == "Adam": return tf.keras.optimizers.Adam(**optim_args) if self.optimizer_name == "AdamW": optim_args["weight_decay"] = self.weight_decay return AdamW(**optim_args) raise NotImplementedError def get_training_actors(self, steps_per_epoch, val_data, test_data, fold): callbacks = self.get_callbacks(fold=fold, val_data=val_data, test_data=test_data) schedule = self.get_lr_schedule(steps_per_epoch=steps_per_epoch) optimizer = self.get_optimizer(schedule) return optimizer, callbacks def load_data(self): if self.project == 435 or self.project == 211: if self.dataset_type is None: data_loader = ENLoader(project=self.project, setting_file=self.setting_file) dataset_type_args = {} else: data_loader = ENLoaderWithSampling(project=self.project, setting_file=self.setting_file) dataset_type_args = self.dataset_type df = data_loader.load_data( language=self.language, test=self.test, reload=self.dataset_reload, **dataset_type_args ) return df def preprocess(self, df): if self.project == 435 or self.project == 211: if self.preprocessing is None: data_prepro = DefaultENNoPreprocessor() elif self.preprocessing == "default": data_prepro = DefaultENPreprocessor() else: raise NotImplementedError return data_prepro( df=df, label_column=self.label_column, class_weight=self.perc_training_tox if self.sample_weights == 'class_weight' else None, filter_low_agreements=self.filter_low_agreements, num_classes=self.num_classes, ) def load_model(self, optimizer): smart_bias_value = ( np.log(self.perc_training_tox / (1 - self.perc_training_tox)) if self.smart_bias_init else 0 ) model = load( optimizer, seed=self.seed, trainable=self.trainable, model_type=self.model_type, loss_name=self.loss_name, num_classes=self.num_classes, additional_layer=self.additional_layer, smart_bias_value=smart_bias_value, content_num_classes=self.content_num_classes, content_loss_name=self.content_loss_name, content_loss_weight=self.content_loss_weight ) if self.model_reload is not False: model_folder = upload_model(full_gcs_model_path=os.path.join(self.model_dir, self.model_reload)) model.load_weights(model_folder) if self.scratch_last_layer: print('Putting the last layer back to scratch') model.layers[-1] = get_last_layer(seed=self.seed, num_classes=self.num_classes, smart_bias_value=smart_bias_value) return model def _train_single_fold(self, mb_generator, test_data, steps_per_epoch, fold, val_data=None): steps_per_epoch = 100 if self.test else steps_per_epoch optimizer, callbacks = self.get_training_actors( steps_per_epoch=steps_per_epoch, val_data=val_data, test_data=test_data, fold=fold ) print("Loading model") model = self.load_model(optimizer) print(f"Nb of steps per epoch: {steps_per_epoch} ---- launching training") training_args = { "epochs": self.train_epochs, "steps_per_epoch": steps_per_epoch, "batch_size": self.mb_size, "callbacks": callbacks, "verbose": 2, } model.fit(mb_generator, **training_args) return def train_full_model(self): print("Setting up random seed.") set_seeds(self.seed) print(f"Loading {self.language} data") df = self.load_data() df = self.preprocess(df=df) print("Going to train on everything but the test dataset") mini_batches, test_data, steps_per_epoch = self.mb_loader.simple_cv_load(df) self._train_single_fold( mb_generator=mini_batches, test_data=test_data, steps_per_epoch=steps_per_epoch, fold="full" ) def train(self): print("Setting up random seed.") set_seeds(self.seed) print(f"Loading {self.language} data") df = self.load_data() df = self.preprocess(df=df) print("Loading MB generator") i = 0 if self.project == 435 or self.project == 211: mb_generator, steps_per_epoch, val_data, test_data = self.mb_loader.no_cv_load(full_df=df) self._train_single_fold( mb_generator=mb_generator, val_data=val_data, test_data=test_data, steps_per_epoch=steps_per_epoch, fold=i, ) else: a = input("Are you sure you want to do multiple fold training? (y/N)") if a.lower() == "y": for mb_generator, steps_per_epoch, val_data, test_data in self.mb_loader(full_df=df): self._train_single_fold( mb_generator=mb_generator, val_data=val_data, test_data=test_data, steps_per_epoch=steps_per_epoch, fold=i, ) i += 1 if i == 3: break